DeepChem right now isn’t very useful for bioinformatics. I’m raising this issue to help brainstorm ways we can improve our support for bioinformatics applications. Here are a couple thoughts:
- Adding more file format loaders:
- We support loading of FASTA files but not .gbf/vcf/.bam/.sam/etc files. More loaders could be useful.
- Adding ML for GWAS architectures. This review (https://www.frontiersin.org/articles/10.3389/fgene.2020.00350/full) has a really nice overview.
Please chime in with more suggestions here!